data_YPZ
# 
_chem_comp.id                                    YPZ 
_chem_comp.name                                  "3-[(3Z)-4-hydroxy-6-oxo-3-(2-phenylhydrazinylidene)cyclohexa-1,4-dien-1-yl]-L-alanine" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C15 H15 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               TYR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-04-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        301.297 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YPZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2E2T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YPZ "C5'" "C5'" C 0 1 Y N N N N N 4.817  -1.249 22.143 -5.167 -2.322 0.056  "C5'" YPZ 1  
YPZ "C4'" "C4'" C 0 1 Y N N N N N 5.660  -0.268 22.736 -6.361 -1.638 -0.081 "C4'" YPZ 2  
YPZ "C3'" "C3'" C 0 1 Y N N N N N 5.391  0.213  24.043 -6.367 -0.256 -0.143 "C3'" YPZ 3  
YPZ "C2'" "C2'" C 0 1 Y N N N N N 4.271  -0.289 24.765 -5.180 0.445  -0.068 "C2'" YPZ 4  
YPZ "C1'" "C1'" C 0 1 Y N N N N N 3.410  -1.275 24.184 -3.978 -0.239 0.071  "C1'" YPZ 5  
YPZ "C6'" "C6'" C 0 1 Y N N N N N 3.700  -1.749 22.859 -3.976 -1.628 0.133  "C6'" YPZ 6  
YPZ OX1   OX1   O 0 1 N N N N N N -3.845 -0.025 26.969 2.968  2.466  0.063  OX1   YPZ 7  
YPZ NX1   NX1   N 0 1 N N N N N N 2.270  -1.756 24.976 -2.777 0.465  0.147  NX1   YPZ 8  
YPZ NX2   NX2   N 0 1 N N N N N N 1.484  -0.789 25.609 -1.663 -0.172 0.276  NX2   YPZ 9  
YPZ N     N     N 0 1 N N N Y Y N -1.126 3.268  25.527 2.960  -1.739 -1.047 N     YPZ 10 
YPZ CA    CA    C 0 1 N N S Y N N -1.926 3.368  26.753 3.815  -0.708 -0.444 CA    YPZ 11 
YPZ C     C     C 0 1 N N N Y N Y -1.609 4.536  27.653 5.160  -1.302 -0.114 C     YPZ 12 
YPZ O     O     O 0 1 N N N Y N Y -0.485 5.042  27.697 5.283  -2.499 -0.009 O     YPZ 13 
YPZ CB    CB    C 0 1 N N N N N N -1.839 2.103  27.632 3.160  -0.187 0.836  CB    YPZ 14 
YPZ CG    CG    C 0 1 N N N N N N -1.539 0.786  26.942 1.872  0.515  0.491  CG    YPZ 15 
YPZ CD1   CD1   C 0 1 N N N N N N -2.665 -0.220 26.664 1.899  1.873  0.109  CD1   YPZ 16 
YPZ CD2   CD2   C 0 1 N N N N N N -0.242 0.491  26.561 0.704  -0.166 0.547  CD2   YPZ 17 
YPZ CE1   CE1   C 0 1 N N N N N N -2.231 -1.505 25.970 0.715  2.552  -0.217 CE1   YPZ 18 
YPZ CE2   CE2   C 0 1 N N N N N N 0.104  -0.694 25.925 -0.512 0.488  0.225  CE2   YPZ 19 
YPZ CZ    CZ    C 0 1 N N N N N N -0.888 -1.691 25.633 -0.483 1.899  -0.167 CZ    YPZ 20 
YPZ OH    OH    O 0 1 N N N N N N -0.589 -2.878 25.006 -1.631 2.548  -0.480 OH    YPZ 21 
YPZ OXT   OXT   O 0 1 N Y N Y N Y -2.626 4.926  28.404 6.222  -0.500 0.063  OXT   YPZ 22 
YPZ "H5'" "H5'" H 0 1 N N N N N N 5.028  -1.613 21.148 -5.167 -3.401 0.108  "H5'" YPZ 23 
YPZ "H4'" "H4'" H 0 1 N N N N N N 6.509  0.112  22.188 -7.291 -2.183 -0.141 "H4'" YPZ 24 
YPZ "H3'" "H3'" H 0 1 N N N N N N 6.034  0.958  24.489 -7.301 0.275  -0.251 "H3'" YPZ 25 
YPZ "H2'" "H2'" H 0 1 N N N N N N 4.069  0.077  25.761 -5.185 1.524  -0.117 "H2'" YPZ 26 
YPZ "H6'" "H6'" H 0 1 N N N N N N 3.062  -2.492 22.405 -3.044 -2.164 0.240  "H6'" YPZ 27 
YPZ H1    H1    H 0 1 N N N N N N 2.066  -2.731 25.059 -2.780 1.434  0.104  H1    YPZ 28 
YPZ H     H     H 0 1 N N N Y Y N -1.219 4.112  24.998 2.826  -2.513 -0.414 H     YPZ 29 
YPZ H2    H2    H 0 1 N Y N Y Y N -0.165 3.129  25.767 2.075  -1.351 -1.337 H2    YPZ 30 
YPZ HA    HA    H 0 1 N N N Y N N -2.979 3.470  26.453 3.943  0.114  -1.148 HA    YPZ 31 
YPZ HB2   HB2   H 0 1 N N N N N N -1.046 2.273  28.375 2.950  -1.023 1.503  HB2   YPZ 32 
YPZ HB3   HB3   H 0 1 N N N N N N -2.805 1.992  28.146 3.834  0.512  1.331  HB3   YPZ 33 
YPZ HD2   HD2   H 0 1 N N N N N N 0.534  1.213  26.767 0.698  -1.206 0.837  HD2   YPZ 34 
YPZ HE1   HE1   H 0 1 N N N N N N -2.959 -2.269 25.739 0.751  3.592  -0.508 HE1   YPZ 35 
YPZ HH    HH    H 0 1 N N N N N N -1.381 -3.393 24.908 -1.505 3.475  -0.725 HH    YPZ 36 
YPZ HXT   HXT   H 0 1 N Y N Y N Y -2.350 5.641  28.966 7.064  -0.927 0.273  HXT   YPZ 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YPZ "C5'" "C4'" DOUB Y N 1  
YPZ "C5'" "C6'" SING Y N 2  
YPZ "C4'" "C3'" SING Y N 3  
YPZ "C6'" "C1'" DOUB Y N 4  
YPZ "C3'" "C2'" DOUB Y N 5  
YPZ "C1'" "C2'" SING Y N 6  
YPZ "C1'" NX1   SING N N 7  
YPZ NX1   NX2   SING N N 8  
YPZ OH    CZ    SING N N 9  
YPZ N     CA    SING N N 10 
YPZ NX2   CE2   DOUB N Z 11 
YPZ CZ    CE2   SING N N 12 
YPZ CZ    CE1   DOUB N N 13 
YPZ CE2   CD2   SING N N 14 
YPZ CE1   CD1   SING N N 15 
YPZ CD2   CG    DOUB N N 16 
YPZ CD1   CG    SING N N 17 
YPZ CD1   OX1   DOUB N N 18 
YPZ CA    CB    SING N N 19 
YPZ CA    C     SING N N 20 
YPZ CG    CB    SING N N 21 
YPZ C     O     DOUB N N 22 
YPZ C     OXT   SING N N 23 
YPZ "C5'" "H5'" SING N N 24 
YPZ "C4'" "H4'" SING N N 25 
YPZ "C3'" "H3'" SING N N 26 
YPZ "C2'" "H2'" SING N N 27 
YPZ "C6'" "H6'" SING N N 28 
YPZ NX1   H1    SING N N 29 
YPZ N     H     SING N N 30 
YPZ N     H2    SING N N 31 
YPZ CA    HA    SING N N 32 
YPZ CB    HB2   SING N N 33 
YPZ CB    HB3   SING N N 34 
YPZ CD2   HD2   SING N N 35 
YPZ CE1   HE1   SING N N 36 
YPZ OH    HH    SING N N 37 
YPZ OXT   HXT   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YPZ SMILES           ACDLabs              12.01 "O=C2C=C(O)\C(=N/Nc1ccccc1)C=C2CC(C(=O)O)N"                                                                                                 
YPZ InChI            InChI                1.03  "InChI=1S/C15H15N3O4/c16-11(15(21)22)6-9-7-12(14(20)8-13(9)19)18-17-10-4-2-1-3-5-10/h1-5,7-8,11,17,20H,6,16H2,(H,21,22)/b18-12-/t11-/m0/s1" 
YPZ InChIKey         InChI                1.03  HWMLKSHHDSRXER-YXQUIRMVSA-N                                                                                                                 
YPZ SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CC1=C/C(=N/Nc2ccccc2)C(=CC1=O)O)C(O)=O"                                                                                            
YPZ SMILES           CACTVS               3.370 "N[CH](CC1=CC(=NNc2ccccc2)C(=CC1=O)O)C(O)=O"                                                                                                
YPZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)N/N=C\2/C=C(C(=O)C=C2O)C[C@@H](C(=O)O)N"                                                                                         
YPZ SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)NN=C2C=C(C(=O)C=C2O)CC(C(=O)O)N"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YPZ "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(3Z)-4-hydroxy-6-oxo-3-(2-phenylhydrazinylidene)cyclohexa-1,4-dien-1-yl]-L-alanine"                            
YPZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-[(3Z)-4-oxidanyl-6-oxidanylidene-3-(phenylhydrazinylidene)cyclohexa-1,4-dien-1-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YPZ "Create component" 2013-04-11 PDBJ 
YPZ "Initial release"  2013-04-24 RCSB 
YPZ "Modify backbone"  2023-11-03 PDBE 
YPZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YPZ 
_pdbx_chem_comp_pcm.modified_residue_id                TYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
