data_UDZ
# 
_chem_comp.id                                    UDZ 
_chem_comp.name                                  
"[(2R,3S,4R,5R,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methylimino-azanylidene-azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H27 N6 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2012-11-30 
_chem_comp.pdbx_modified_date                    2013-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        633.374 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UDZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3W1V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UDZ N1    N1    N 0 1 N N N -19.750 -36.809 -21.106 5.921  -0.845 0.659  N1    UDZ 1  
UDZ C2    C2    C 0 1 N N N -18.617 -36.626 -20.251 5.784  -1.105 -0.654 C2    UDZ 2  
UDZ O2    O2    O 0 1 N N N -17.638 -37.398 -20.320 5.225  -0.297 -1.369 O2    UDZ 3  
UDZ N3    N3    N 0 1 N N N -18.631 -35.633 -19.351 6.257  -2.247 -1.186 N3    UDZ 4  
UDZ C4    C4    C 0 1 N N N -19.680 -34.761 -19.211 6.879  -3.154 -0.405 C4    UDZ 5  
UDZ O4    O4    O 0 1 N N N -19.687 -33.850 -18.312 7.308  -4.188 -0.886 O4    UDZ 6  
UDZ C5    C5    C 0 1 N N N -20.810 -34.903 -20.084 7.030  -2.893 0.978  C5    UDZ 7  
UDZ C6    C6    C 0 1 N N N -20.793 -35.940 -21.021 6.546  -1.739 1.485  C6    UDZ 8  
UDZ PA    PA    P 0 1 N N N -23.244 -35.438 -24.416 0.295  2.155  -0.985 PA    UDZ 9  
UDZ PB    PB    P 0 1 N N N -25.513 -37.103 -24.163 -2.276 0.709  -1.271 PB    UDZ 10 
UDZ "C1'" "C1'" C 0 1 N N R -27.056 -34.988 -24.289 -4.689 -0.145 -0.504 "C1'" UDZ 11 
UDZ "O1'" "O1'" O 0 1 N N N -26.927 -36.407 -24.492 -3.363 0.267  -0.168 "O1'" UDZ 12 
UDZ O1A   O1A   O 0 1 N N N -22.734 -34.558 -25.525 0.682  1.817  -2.373 O1A   UDZ 13 
UDZ C1B   C1B   C 0 1 N N R -19.760 -37.864 -22.112 5.402  0.409  1.209  C1B   UDZ 14 
UDZ O1B   O1B   O 0 1 N N N -25.498 -38.507 -24.725 -2.835 1.794  -2.108 O1B   UDZ 15 
UDZ "C2'" "C2'" C 0 1 N N R -28.168 -34.745 -23.282 -5.641 0.217  0.639  "C2'" UDZ 16 
UDZ "O2'" "O2'" O 0 1 N N N -21.111 -39.746 -21.039 7.347  1.898  1.366  "O2'" UDZ 17 
UDZ O2A   O2A   O 0 1 N N N -23.568 -34.934 -23.041 -0.134 3.705  -0.909 O2A   UDZ 18 
UDZ C2B   C2B   C 0 1 N N R -21.035 -38.745 -22.050 6.163  1.622  0.615  C2B   UDZ 19 
UDZ O2B   O2B   O 0 1 N N N -25.217 -36.835 -22.682 -1.913 -0.554 -2.202 O2B   UDZ 20 
UDZ "C3'" "C3'" C 0 1 N N R -29.516 -35.285 -23.893 -5.223 -0.544 1.901  "C3'" UDZ 21 
UDZ "O3'" "O3'" O 0 1 N N N -30.568 -35.069 -22.937 -6.150 -0.269 2.954  "O3'" UDZ 22 
UDZ O3A   O3A   O 0 1 N N N -24.531 -36.165 -25.054 -0.944 1.232  -0.533 O3A   UDZ 23 
UDZ C3B   C3B   C 0 1 N N S -21.043 -39.309 -23.493 5.129  2.763  0.773  C3B   UDZ 24 
UDZ O3B   O3B   O 0 1 N N N -20.366 -40.601 -23.435 5.404  3.527  1.949  O3B   UDZ 25 
UDZ "C4'" "C4'" C 0 1 N N S -29.831 -34.817 -25.350 -5.220 -2.046 1.601  "C4'" UDZ 26 
UDZ "O4'" "O4'" O 0 1 N N N -30.680 -35.777 -26.035 -4.764 -2.762 2.750  "O4'" UDZ 27 
UDZ C4B   C4B   C 0 1 N N R -20.390 -38.175 -24.357 3.778  2.033  0.908  C4B   UDZ 28 
UDZ O4B   O4B   O 0 1 N N N -19.682 -37.292 -23.445 4.039  0.625  0.783  O4B   UDZ 29 
UDZ "C5'" "C5'" C 0 1 N N R -28.549 -34.809 -26.227 -4.285 -2.321 0.420  "C5'" UDZ 30 
UDZ "O5'" "O5'" O 0 1 N N N -27.367 -34.354 -25.535 -4.711 -1.559 -0.711 "O5'" UDZ 31 
UDZ C5B   C5B   C 0 1 N N N -21.378 -37.306 -25.117 2.829  2.488  -0.202 C5B   UDZ 32 
UDZ O5B   O5B   O 0 1 N N N -22.271 -36.751 -24.142 1.544  1.895  -0.002 O5B   UDZ 33 
UDZ "C6'" "C6'" C 0 1 N N N -28.713 -34.163 -27.626 -4.322 -3.811 0.075  "C6'" UDZ 34 
UDZ "C7'" "C7'" C 0 1 N N N -28.292 -35.150 -20.792 -6.333 2.505  0.167  "C7'" UDZ 35 
UDZ "O7'" "O7'" O 0 1 N N N -28.271 -35.972 -19.879 -7.068 2.074  -0.695 "O7'" UDZ 36 
UDZ "C8'" "C8'" C 0 1 N N N -28.883 -33.797 -20.559 -6.266 3.988  0.428  "C8'" UDZ 37 
UDZ "N2'" "N2'" N 0 1 N N N -27.790 -35.401 -22.021 -5.576 1.658  0.893  "N2'" UDZ 38 
UDZ N41   N41   N 0 1 N N N -26.737 -31.555 -26.551 -1.673 -5.551 -0.591 N41   UDZ 39 
UDZ N40   N40   N 1 1 N N N -27.692 -32.037 -27.040 -2.507 -4.823 -0.783 N40   UDZ 40 
UDZ "N6'" "N6'" N 0 1 N N N -28.719 -32.706 -27.507 -3.340 -4.094 -0.975 "N6'" UDZ 41 
UDZ H1    H1    H 0 1 N N N -17.838 -35.523 -18.752 6.150  -2.419 -2.134 H1    UDZ 42 
UDZ H2    H2    H 0 1 N N N -21.650 -34.227 -20.019 7.525  -3.608 1.619  H2    UDZ 43 
UDZ H3    H3    H 0 1 N N N -21.629 -36.054 -21.695 6.653  -1.523 2.538  H3    UDZ 44 
UDZ H4    H4    H 0 1 N N N -26.117 -34.581 -23.885 -5.007 0.361  -1.416 H4    UDZ 45 
UDZ H5    H5    H 0 1 N N N -18.891 -38.519 -21.951 5.470  0.408  2.297  H5    UDZ 46 
UDZ H6    H6    H 0 1 N N N -28.272 -33.662 -23.119 -6.659 -0.059 0.366  H6    UDZ 47 
UDZ H7    H7    H 0 1 N N N -21.102 -39.334 -20.183 7.857  2.649  1.033  H7    UDZ 48 
UDZ H8    H8    H 0 1 N N N -23.401 -34.000 -22.998 -0.400 3.996  -0.026 H8    UDZ 49 
UDZ H9    H9    H 0 1 N N N -21.898 -38.070 -21.954 6.401  1.455  -0.436 H9    UDZ 50 
UDZ H10   H10   H 0 1 N N N -25.040 -37.657 -22.240 -1.541 -1.304 -1.719 H10   UDZ 51 
UDZ H11   H11   H 0 1 N N N -29.379 -36.374 -23.965 -4.224 -0.229 2.203  H11   UDZ 52 
UDZ H12   H12   H 0 1 N N N -30.290 -35.382 -22.084 -5.946 -0.720 3.785  H12   UDZ 53 
UDZ H13   H13   H 0 1 N N N -22.086 -39.443 -23.817 5.132  3.405  -0.107 H13   UDZ 54 
UDZ H14   H14   H 0 1 N N N -20.862 -41.194 -22.883 6.268  3.961  1.943  H14   UDZ 55 
UDZ H15   H15   H 0 1 N N N -30.285 -33.815 -25.334 -6.230 -2.369 1.348  H15   UDZ 56 
UDZ H16   H16   H 0 1 N N N -31.505 -35.858 -25.571 -4.736 -3.721 2.631  H16   UDZ 57 
UDZ H17   H17   H 0 1 N N N -19.686 -38.633 -25.067 3.339  2.244  1.883  H17   UDZ 58 
UDZ H18   H18   H 0 1 N N N -28.365 -35.872 -26.442 -3.267 -2.035 0.689  H18   UDZ 59 
UDZ H19   H19   H 0 1 N N N -20.847 -36.501 -25.646 2.736  3.573  -0.179 H19   UDZ 60 
UDZ H20   H20   H 0 1 N N N -21.939 -37.914 -25.842 3.225  2.177  -1.169 H20   UDZ 61 
UDZ H21   H21   H 0 1 N N N -29.662 -34.496 -28.072 -4.083 -4.396 0.964  H21   UDZ 62 
UDZ H22   H22   H 0 1 N N N -27.877 -34.472 -28.270 -5.318 -4.077 -0.277 H22   UDZ 63 
UDZ H23   H23   H 0 1 N N N -29.242 -33.727 -19.522 -7.007 4.258  1.180  H23   UDZ 64 
UDZ H24   H24   H 0 1 N N N -28.117 -33.027 -20.734 -5.271 4.249  0.788  H24   UDZ 65 
UDZ H25   H25   H 0 1 N N N -29.725 -33.641 -21.250 -6.471 4.529  -0.496 H25   UDZ 66 
UDZ H26   H26   H 0 1 N N N -27.086 -36.109 -22.080 -4.988 2.003  1.582  H26   UDZ 67 
UDZ H27   H27   H 0 1 N N N -26.255 -32.199 -25.957 -0.830 -5.239 -0.226 H27   UDZ 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UDZ "C6'" "N6'" SING N N 1  
UDZ "C6'" "C5'" SING N N 2  
UDZ "N6'" N40   DOUB N N 3  
UDZ N40   N41   DOUB N N 4  
UDZ "C5'" "O5'" SING N N 5  
UDZ "C5'" "C4'" SING N N 6  
UDZ "O4'" "C4'" SING N N 7  
UDZ "O5'" "C1'" SING N N 8  
UDZ O1A   PA    DOUB N N 9  
UDZ "C4'" "C3'" SING N N 10 
UDZ C5B   C4B   SING N N 11 
UDZ C5B   O5B   SING N N 12 
UDZ O3A   PA    SING N N 13 
UDZ O3A   PB    SING N N 14 
UDZ O1B   PB    DOUB N N 15 
UDZ "O1'" "C1'" SING N N 16 
UDZ "O1'" PB    SING N N 17 
UDZ PA    O5B   SING N N 18 
UDZ PA    O2A   SING N N 19 
UDZ C4B   C3B   SING N N 20 
UDZ C4B   O4B   SING N N 21 
UDZ "C1'" "C2'" SING N N 22 
UDZ PB    O2B   SING N N 23 
UDZ "C3'" "C2'" SING N N 24 
UDZ "C3'" "O3'" SING N N 25 
UDZ C3B   O3B   SING N N 26 
UDZ C3B   C2B   SING N N 27 
UDZ O4B   C1B   SING N N 28 
UDZ "C2'" "N2'" SING N N 29 
UDZ C1B   C2B   SING N N 30 
UDZ C1B   N1    SING N N 31 
UDZ C2B   "O2'" SING N N 32 
UDZ "N2'" "C7'" SING N N 33 
UDZ N1    C6    SING N N 34 
UDZ N1    C2    SING N N 35 
UDZ C6    C5    DOUB N N 36 
UDZ "C7'" "C8'" SING N N 37 
UDZ "C7'" "O7'" DOUB N N 38 
UDZ O2    C2    DOUB N N 39 
UDZ C2    N3    SING N N 40 
UDZ C5    C4    SING N N 41 
UDZ N3    C4    SING N N 42 
UDZ C4    O4    DOUB N N 43 
UDZ N3    H1    SING N N 44 
UDZ C5    H2    SING N N 45 
UDZ C6    H3    SING N N 46 
UDZ "C1'" H4    SING N N 47 
UDZ C1B   H5    SING N N 48 
UDZ "C2'" H6    SING N N 49 
UDZ "O2'" H7    SING N N 50 
UDZ O2A   H8    SING N N 51 
UDZ C2B   H9    SING N N 52 
UDZ O2B   H10   SING N N 53 
UDZ "C3'" H11   SING N N 54 
UDZ "O3'" H12   SING N N 55 
UDZ C3B   H13   SING N N 56 
UDZ O3B   H14   SING N N 57 
UDZ "C4'" H15   SING N N 58 
UDZ "O4'" H16   SING N N 59 
UDZ C4B   H17   SING N N 60 
UDZ "C5'" H18   SING N N 61 
UDZ C5B   H19   SING N N 62 
UDZ C5B   H20   SING N N 63 
UDZ "C6'" H21   SING N N 64 
UDZ "C6'" H22   SING N N 65 
UDZ "C8'" H23   SING N N 66 
UDZ "C8'" H24   SING N N 67 
UDZ "C8'" H25   SING N N 68 
UDZ "N2'" H26   SING N N 69 
UDZ N41   H27   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UDZ SMILES           ACDLabs              12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3NC(=O)C)C/N=[N+]=[N@H])O)O" 
UDZ InChI            InChI                1.03  
;InChI=1S/C17H26N6O16P2/c1-6(24)20-10-13(28)11(26)7(4-19-22-18)37-16(10)38-41(33,34)39-40(31,32)35-5-8-12(27)14(29)15(36-8)23-3-2-9(25)21-17(23)30/h2-3,7-8,10-16,18,26-29H,4-5H2,1H3,(H3-,20,21,24,25,30,31,32,33,34)/p+1/t7-,8-,10-,11-,12-,13-,14-,15-,16-/m1/s1
;
UDZ InChIKey         InChI                1.03  JRORMXITLCSMOP-CFRASDGPSA-O 
UDZ SMILES_CANONICAL CACTVS               3.370 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CN=[N+]=N)O[C@@H]1O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O" 
UDZ SMILES           CACTVS               3.370 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CN=[N+]=N)O[CH]1O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O" 
UDZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CN=[N+]=N)O)O" 
UDZ SMILES           "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(OC1OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CN=[N+]=N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UDZ "SYSTEMATIC NAME" ACDLabs              12.01 
;1-{[(2R,3S,4R,5R,6R)-5-(acetylamino)-6-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3,4-dihydroxytetrahydro-2H-pyran-2-yl]methyl}triaza-1,2-dien-2-ium (non-preferred name)
;
UDZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
"[(2R,3S,4R,5R,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methylimino-azanylidene-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UDZ "Create component" 2012-11-30 PDBJ 
UDZ "Initial release"  2013-06-12 RCSB 
# 
