data_LMZ
# 
_chem_comp.id                                    LMZ 
_chem_comp.name                                  "5-NITROSO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H14 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-30 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        290.230 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LMZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1C41 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LMZ N1   N1   N 0 1 Y N N 60.363 79.779 6.125  1.368  0.199  -1.990 N1   LMZ 1  
LMZ C2   C2   C 0 1 Y N N 60.871 78.960 5.124  1.892  0.257  -3.223 C2   LMZ 2  
LMZ N3   N3   N 0 1 Y N N 62.213 78.734 5.156  1.149  0.146  -4.335 N3   LMZ 3  
LMZ C4   C4   C 0 1 Y N N 63.084 79.245 6.088  -0.185 -0.037 -4.264 C4   LMZ 4  
LMZ C5   C5   C 0 1 Y N N 62.502 80.132 7.168  -0.814 -0.114 -2.928 C5   LMZ 5  
LMZ C6   C6   C 0 1 Y N N 61.105 80.417 7.108  0.035  0.011  -1.791 C6   LMZ 6  
LMZ N7   N7   N 0 1 N N N 60.426 81.282 7.929  -0.471 -0.049 -0.543 N7   LMZ 7  
LMZ C8   C8   C 0 1 N N N 59.755 80.560 9.056  0.426  -0.031 0.613  C8   LMZ 8  
LMZ C9   C9   C 0 1 N N S 58.178 80.541 8.956  -0.398 -0.110 1.900  C9   LMZ 9  
LMZ O9   O9   O 0 1 N N N 57.856 79.890 7.760  -1.285 1.007  1.967  O9   LMZ 10 
LMZ C10  C10  C 0 1 N N S 57.210 81.793 9.114  0.539  -0.090 3.109  C10  LMZ 11 
LMZ O10  O10  O 0 1 N N N 57.343 82.687 8.027  1.426  -1.208 3.042  O10  LMZ 12 
LMZ C11  C11  C 0 1 N N R 56.968 82.603 10.535 -0.285 -0.170 4.395  C11  LMZ 13 
LMZ O11  O11  O 0 1 N N N 57.839 81.782 11.337 -1.172 0.948  4.462  O11  LMZ 14 
LMZ C12  C12  C 0 1 N N N 55.668 82.576 11.443 0.652  -0.150 5.604  C12  LMZ 15 
LMZ O12  O12  O 0 1 N N N 54.635 82.176 10.565 -0.117 -0.224 6.805  O12  LMZ 16 
LMZ N5   N5   N 0 1 N N N 63.429 80.688 8.122  -2.114 -0.293 -2.793 N5   LMZ 17 
LMZ O52  O52  O 0 1 N N N 63.009 81.413 9.031  -2.806 -0.493 -3.775 O52  LMZ 18 
LMZ O4   O4   O 0 1 N N N 64.395 78.868 5.908  -0.854 -0.137 -5.274 O4   LMZ 19 
LMZ O2   O2   O 0 1 N N N 59.961 78.453 4.203  3.090  0.422  -3.338 O2   LMZ 20 
LMZ HN1  HN1  H 0 1 N N N 59.650 79.233 6.609  1.954  0.286  -1.221 HN1  LMZ 21 
LMZ HN3  HN3  H 0 1 N N N 62.595 78.135 4.424  1.578  0.199  -5.204 HN3  LMZ 22 
LMZ HN7  HN7  H 0 1 N N N 59.762 81.851 7.403  -1.431 -0.106 -0.412 HN7  LMZ 23 
LMZ H81  1H8  H 0 1 N N N 60.154 79.523 9.150  1.004  0.892  0.609  H81  LMZ 24 
LMZ H82  2H8  H 0 1 N N N 60.080 80.976 10.037 1.102  -0.883 0.562  H82  LMZ 25 
LMZ H9   H9   H 0 1 N N N 57.951 80.066 9.939  -0.977 -1.034 1.904  H9   LMZ 26 
LMZ HO9  HO9  H 0 1 N N N 56.908 79.878 7.699  -0.734 1.802  1.961  HO9  LMZ 27 
LMZ H10  H10  H 0 1 N N N 56.254 81.217 9.129  1.117  0.833  3.104  H10  LMZ 28 
LMZ HO10 HO10 H 0 0 N N N 56.764 83.434 8.121  0.875  -2.003 3.047  HO10 LMZ 29 
LMZ H11  H11  H 0 1 N N N 57.037 83.682 10.264 -0.864 -1.094 4.399  H11  LMZ 30 
LMZ HO11 HO11 H 0 0 N N N 57.700 82.247 12.153 -0.621 1.742  4.456  HO11 LMZ 31 
LMZ H121 1H12 H 0 0 N N N 55.762 81.941 12.355 1.230  0.773  5.600  H121 LMZ 32 
LMZ H122 2H12 H 0 0 N N N 55.466 83.532 11.978 1.328  -1.003 5.553  H122 LMZ 33 
LMZ HO12 HO12 H 0 0 N N N 53.856 82.159 11.108 0.509  -0.209 7.541  HO12 LMZ 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LMZ N1  C2   SING Y N 1  
LMZ N1  C6   SING Y N 2  
LMZ N1  HN1  SING N N 3  
LMZ C2  N3   SING Y N 4  
LMZ C2  O2   DOUB N N 5  
LMZ N3  C4   SING Y N 6  
LMZ N3  HN3  SING N N 7  
LMZ C4  C5   SING Y N 8  
LMZ C4  O4   DOUB N N 9  
LMZ C5  C6   DOUB Y N 10 
LMZ C5  N5   SING N N 11 
LMZ C6  N7   SING N N 12 
LMZ N7  C8   SING N N 13 
LMZ N7  HN7  SING N N 14 
LMZ C8  C9   SING N N 15 
LMZ C8  H81  SING N N 16 
LMZ C8  H82  SING N N 17 
LMZ C9  O9   SING N N 18 
LMZ C9  C10  SING N N 19 
LMZ C9  H9   SING N N 20 
LMZ O9  HO9  SING N N 21 
LMZ C10 O10  SING N N 22 
LMZ C10 C11  SING N N 23 
LMZ C10 H10  SING N N 24 
LMZ O10 HO10 SING N N 25 
LMZ C11 O11  SING N N 26 
LMZ C11 C12  SING N N 27 
LMZ C11 H11  SING N N 28 
LMZ O11 HO11 SING N N 29 
LMZ C12 O12  SING N N 30 
LMZ C12 H121 SING N N 31 
LMZ C12 H122 SING N N 32 
LMZ O12 HO12 SING N N 33 
LMZ N5  O52  DOUB N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LMZ SMILES           ACDLabs              10.04 "O=C1NC(NCC(O)C(O)C(O)CO)=C(N=O)C(=O)N1"                                                                                           
LMZ SMILES_CANONICAL CACTVS               3.341 "OC[C@@H](O)[C@@H](O)[C@@H](O)CNC1=C(N=O)C(=O)NC(=O)N1"                                                                            
LMZ SMILES           CACTVS               3.341 "OC[CH](O)[CH](O)[CH](O)CNC1=C(N=O)C(=O)NC(=O)N1"                                                                                  
LMZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H]([C@@H](CO)O)O)O)NC1=C(C(=O)NC(=O)N1)N=O"                                                                          
LMZ SMILES           "OpenEye OEToolkits" 1.5.0 "C(C(C(C(CO)O)O)O)NC1=C(C(=O)NC(=O)N1)N=O"                                                                                         
LMZ InChI            InChI                1.03  "InChI=1S/C9H14N4O7/c14-2-4(16)6(17)3(15)1-10-7-5(13-20)8(18)12-9(19)11-7/h3-4,6,14-17H,1-2H2,(H3,10,11,12,18,19)/t3-,4+,6-/m0/s1" 
LMZ InChIKey         InChI                1.03  YMWIHKCBRFEJMH-RPDRRWSUSA-N                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LMZ "SYSTEMATIC NAME" ACDLabs              10.04 "1-deoxy-1-[(5-nitroso-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribitol"  
LMZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-nitroso-6-[[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]amino]-1H-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LMZ "Create component"  1999-07-30 EBI  
LMZ "Modify descriptor" 2011-06-04 RCSB 
# 
