data_LBZ
# 
_chem_comp.id                                    LBZ 
_chem_comp.name                                  "(2~{S})-2-azanyl-6-benzamido-hexanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H18 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-01-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.294 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     LBZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6LS6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LBZ C4  C4  C 0 1 Y N N N N N 12.683 1.091  16.418 5.205  1.949  -0.337 C4  LBZ 1  
LBZ C5  C5  C 0 1 Y N N N N N 13.999 0.683  16.150 6.400  1.262  -0.230 C5  LBZ 2  
LBZ C6  C6  C 0 1 Y N N N N N 14.317 -0.678 16.133 6.403  -0.101 0.007  C6  LBZ 3  
LBZ C11 C11 C 0 1 N N N N N N 5.107  -2.771 16.042 -3.365 0.336  0.005  C11 LBZ 4  
LBZ C7  C7  C 0 1 N N N N N N 10.923 -2.295 16.917 2.721  -0.823 0.163  C7  LBZ 5  
LBZ C8  C8  C 0 1 N N N N N N 8.546  -3.093 16.804 0.285  -0.876 0.192  C8  LBZ 6  
LBZ C9  C9  C 0 1 N N N N N N 7.244  -2.524 17.392 -0.878 0.105  0.026  C9  LBZ 7  
LBZ C10 C10 C 0 1 N N N N N N 6.379  -1.924 16.320 -2.203 -0.645 0.170  C10 LBZ 8  
LBZ N1  N1  N 0 1 N N N N N N 9.536  -2.059 16.568 1.554  -0.157 0.054  N1  LBZ 9  
LBZ C3  C3  C 0 1 Y N N N N N 11.683 0.139  16.671 4.006  1.278  -0.209 C3  LBZ 10 
LBZ N   N   N 0 1 N N N Y Y N 3.992  -4.193 17.595 -4.832 -1.374 -0.955 N   LBZ 11 
LBZ CA  CA  C 0 1 N N S Y N N 4.180  -2.801 17.241 -4.691 -0.415 0.148  CA  LBZ 12 
LBZ C   C   C 0 1 N N N Y N Y 2.864  -2.108 16.916 -5.832 0.569  0.108  C   LBZ 13 
LBZ O   O   O 0 1 N N N Y N Y 2.500  -1.170 17.580 -6.460 0.724  -0.912 O   LBZ 14 
LBZ C1  C1  C 0 1 Y N N N N N 13.319 -1.625 16.390 5.211  -0.784 0.137  C1  LBZ 15 
LBZ C2  C2  C 0 1 Y N N N N N 11.998 -1.223 16.657 4.001  -0.098 0.025  C2  LBZ 16 
LBZ O1  O1  O 0 1 N N N N N N 11.246 -3.345 17.402 2.720  -2.020 0.376  O1  LBZ 17 
LBZ OXT O2  O 0 1 N Y N Y N Y 2.166  -2.579 15.887 -6.150 1.272  1.206  O2  LBZ 18 
LBZ H1  H1  H 0 1 N N N N N N 12.439 2.143  16.430 5.209  3.014  -0.517 H1  LBZ 19 
LBZ H20 H2  H 0 1 N N N N N N 14.765 1.420  15.957 7.336  1.792  -0.331 H2  LBZ 20 
LBZ H3  H3  H 0 1 N N N N N N 15.327 -0.997 15.923 7.340  -0.632 0.089  H3  LBZ 21 
LBZ H4  H4  H 0 1 N N N N N N 4.569  -2.336 15.186 -3.300 1.108  0.771  H4  LBZ 22 
LBZ H5  H5  H 0 1 N N N N N N 5.410  -3.800 15.800 -3.314 0.797  -0.981 H5  LBZ 23 
LBZ H6  H6  H 0 1 N N N N N N 8.317  -3.589 15.849 0.233  -1.337 1.178  H6  LBZ 24 
LBZ H7  H7  H 0 1 N N N N N N 8.962  -3.828 17.509 0.220  -1.648 -0.575 H7  LBZ 25 
LBZ H8  H8  H 0 1 N N N N N N 7.493  -1.746 18.129 -0.813 0.878  0.793  H8  LBZ 26 
LBZ H9  H9  H 0 1 N N N N N N 6.690  -3.335 17.888 -0.826 0.567  -0.960 H9  LBZ 27 
LBZ H10 H10 H 0 1 N N N N N N 6.965  -1.852 15.392 -2.254 -1.107 1.156  H10 LBZ 28 
LBZ H11 H11 H 0 1 N N N N N N 6.070  -0.917 16.638 -2.268 -1.418 -0.596 H11 LBZ 29 
LBZ H12 H12 H 0 1 N N N N N N 9.262  -1.186 16.165 1.554  0.798  -0.115 H12 LBZ 30 
LBZ H13 H13 H 0 1 N N N N N N 10.672 0.458  16.876 3.073  1.817  -0.288 H13 LBZ 31 
LBZ H   H14 H 0 1 N N N Y Y N 3.383  -4.257 18.386 -4.822 -0.903 -1.847 H14 LBZ 32 
LBZ H2  H15 H 0 1 N Y N Y Y N 3.587  -4.682 16.822 -4.115 -2.083 -0.912 H15 LBZ 33 
LBZ HA  H17 H 0 1 N N N Y N N 4.662  -2.269 18.074 -4.705 -0.949 1.098  H17 LBZ 34 
LBZ H18 H18 H 0 1 N N N N N N 13.566 -2.676 16.383 5.215  -1.848 0.322  H18 LBZ 35 
LBZ HXT H19 H 0 1 N Y N Y N Y 1.373  -2.067 15.781 -6.890 1.891  1.132  H19 LBZ 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LBZ C11 C10 SING N N 1  
LBZ C11 CA  SING N N 2  
LBZ C6  C5  DOUB Y N 3  
LBZ C6  C1  SING Y N 4  
LBZ C5  C4  SING Y N 5  
LBZ C10 C9  SING N N 6  
LBZ C1  C2  DOUB Y N 7  
LBZ C4  C3  DOUB Y N 8  
LBZ N1  C8  SING N N 9  
LBZ N1  C7  SING N N 10 
LBZ C2  C3  SING Y N 11 
LBZ C2  C7  SING N N 12 
LBZ C8  C9  SING N N 13 
LBZ C   CA  SING N N 14 
LBZ C   O   DOUB N N 15 
LBZ C7  O1  DOUB N N 16 
LBZ CA  N   SING N N 17 
LBZ C   OXT SING N N 18 
LBZ C4  H1  SING N N 19 
LBZ C5  H20 SING N N 20 
LBZ C6  H3  SING N N 21 
LBZ C11 H4  SING N N 22 
LBZ C11 H5  SING N N 23 
LBZ C8  H6  SING N N 24 
LBZ C8  H7  SING N N 25 
LBZ C9  H8  SING N N 26 
LBZ C9  H9  SING N N 27 
LBZ C10 H10 SING N N 28 
LBZ C10 H11 SING N N 29 
LBZ N1  H12 SING N N 30 
LBZ C3  H13 SING N N 31 
LBZ N   H   SING N N 32 
LBZ N   H2  SING N N 33 
LBZ CA  HA  SING N N 34 
LBZ C1  H18 SING N N 35 
LBZ OXT HXT SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LBZ InChI            InChI                1.03  "InChI=1S/C13H18N2O3/c14-11(13(17)18)8-4-5-9-15-12(16)10-6-2-1-3-7-10/h1-3,6-7,11H,4-5,8-9,14H2,(H,15,16)(H,17,18)/t11-/m0/s1" 
LBZ InChIKey         InChI                1.03  KODLJWKGAKBGOB-NSHDSACASA-N                                                                                                    
LBZ SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCNC(=O)c1ccccc1)C(O)=O"                                                                                            
LBZ SMILES           CACTVS               3.385 "N[CH](CCCCNC(=O)c1ccccc1)C(O)=O"                                                                                              
LBZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)NCCCC[C@@H](C(=O)O)N"                                                                                          
LBZ SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)NCCCCC(C(=O)O)N"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           LBZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-benzamido-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LBZ "Create component"         2020-01-22 PDBJ 
LBZ "Modify internal type"     2020-01-22 PDBJ 
LBZ "Modify parent residue"    2020-01-23 PDBJ 
LBZ "Modify component comp_id" 2020-11-09 PDBJ 
LBZ "Initial release"          2020-11-18 RCSB 
LBZ "Modify backbone"          2023-11-03 PDBE 
LBZ "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LBZ 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Benzoylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
